Palladium in PDB 3c6s: Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide

The structure of Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide, PDB code: 3c6s was solved by F.A.Saul, B.Vulliez-Le-Normand, G.A.Bentley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.79 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.860, 137.150, 109.380, 90.00, 94.97, 90.00
R / Rfree (%)	19.1 / 25.1

The binding sites of Palladium atom in the Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide (pdb code 3c6s). This binding sites where shown within 5.0 Angstroms radius around Palladium atom.
In total only one binding site of Palladium was determined in the Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide, PDB code: 3c6s:

Palladium binding site 1 out of 1 in the Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide


Mono view


Stereo pair view

A full contact list of Palladium with other atoms in the Pd binding site number 1 of Crystal Structure of Fab F22-4 in Complex with A Shigella Flexneri 2A O-Ag Pentadecasaccharide within 5.0Å range: probe atom residue distance (Å) B Occ A:Pd215 b:26.7 occ:1.00 OD1 A:ASP1 2.1 18.9 1.0 O A:ASP1 2.2 10.8 1.0 O E:HOH260 2.2 11.8 1.0 O E:ASP1 2.3 17.6 1.0 N E:ASP1 2.3 16.1 1.0 N A:ASP1 2.3 18.7 1.0 C A:ASP1 2.8 15.3 1.0 CA A:ASP1 2.9 18.0 1.0 C E:ASP1 3.0 15.9 1.0 CG A:ASP1 3.0 21.1 1.0 CA E:ASP1 3.0 16.2 1.0 CB A:ASP1 3.4 19.2 1.0 CB E:ASP1 3.6 17.8 1.0 OE2 E:GLU93 4.1 17.6 1.0 N A:ILE2 4.1 13.0 1.0 OD2 A:ASP1 4.2 24.5 1.0 N E:ILE2 4.3 14.1 1.0 O E:HOH228 4.3 12.4 1.0 OE1 E:GLU93 4.4 16.4 1.0 CG E:ASP1 4.5 19.4 1.0 CE E:LYS27 4.5 25.3 1.0 O A:HOH342 4.6 40.3 1.0 NZ E:LYS27 4.6 27.9 1.0 CG2 A:VAL3 4.7 12.6 1.0 CD E:GLU93 4.7 16.8 1.0 OD1 E:ASP1 4.8 22.4 1.0 O E:HOH331 4.8 32.1 1.0 CA A:ILE2 4.9 15.4 1.0

B.Vulliez-Le Normand, F.A.Saul, A.Phalipon, F.Belot, C.Guerreiro, L.A.Mulard, G.A.Bentley. Structures of Synthetic O-Antigen Fragments From Serotype 2A Shigella Flexneri in Complex with A Protective Monoclonal Antibody Proc.Natl.Acad.Sci.Usa V. 105 9976 2008.
ISSN: ISSN 0027-8424
PubMed: 18621718
DOI: 10.1073/PNAS.0801711105