Palladium in PDB 8j8e: Human Serum Albumin-Palladium(II) Agent Complex

The structure of Human Serum Albumin-Palladium(II) Agent Complex, PDB code: 8j8e was solved by Z.L.Zhang, J.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	91.96 / 2.50
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	38.356, 92.706, 95.345, 74.89, 89.73, 79.88
R / Rfree (%)	25 / 31.6

The binding sites of Palladium atom in the Human Serum Albumin-Palladium(II) Agent Complex (pdb code 8j8e). This binding sites where shown within 5.0 Angstroms radius around Palladium atom.
In total 2 binding sites of Palladium where determined in the Human Serum Albumin-Palladium(II) Agent Complex, PDB code: 8j8e:
Jump to Palladium binding site number: 1; 2;

Palladium binding site 1 out of 2 in the Human Serum Albumin-Palladium(II) Agent Complex


Mono view


Stereo pair view

A full contact list of Palladium with other atoms in the Pd binding site number 1 of Human Serum Albumin-Palladium(II) Agent Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Pd1007 b:61.4 occ:1.00 PD1 A:U5U1007 0.0 61.4 1.0 N13 A:U5U1007 1.8 65.7 1.0 S17 A:U5U1007 1.8 65.0 1.0 N11 A:U5U1007 1.9 67.0 1.0 NE2 A:HIS242 2.2 52.5 1.0 C14 A:U5U1007 2.8 65.2 1.0 C8 A:U5U1007 2.8 65.6 1.0 C9 A:U5U1007 2.8 66.2 1.0 N12 A:U5U1007 2.8 61.9 1.0 C15 A:U5U1007 2.9 60.9 1.0 CD2 A:HIS242 3.0 52.0 1.0 CE1 A:HIS242 3.2 52.7 1.0 C2 A:U5U1007 4.1 63.6 1.0 C7 A:U5U1007 4.1 62.2 1.0 N16 A:U5U1007 4.2 56.8 1.0 CG A:HIS242 4.2 48.2 1.0 CD2 A:LEU238 4.3 40.4 1.0 ND1 A:HIS242 4.3 55.2 1.0 C1 A:U5U1007 4.3 66.0 1.0 CD1 A:LEU238 4.3 37.6 1.0 C3 A:U5U1007 4.6 63.9 1.0 CG A:LEU238 4.7 38.1 1.0 CB A:LEU238 4.7 37.8 1.0 C12 A:U5U1007 4.9 55.2 1.0 C4 A:U5U1007 5.0 69.6 1.0

Palladium binding site 2 out of 2 in the Human Serum Albumin-Palladium(II) Agent Complex


Mono view


Stereo pair view

A full contact list of Palladium with other atoms in the Pd binding site number 2 of Human Serum Albumin-Palladium(II) Agent Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Pd1007 b:71.3 occ:1.00 PD1 I:U5U1007 0.0 71.3 1.0 N13 I:U5U1007 1.8 83.9 1.0 N11 I:U5U1007 1.8 81.7 1.0 S17 I:U5U1007 1.8 83.1 1.0 C9 I:U5U1007 2.6 78.2 1.0 C14 I:U5U1007 2.6 79.9 1.0 NE2 I:HIS242 2.7 58.4 1.0 N12 I:U5U1007 2.8 82.3 1.0 C8 I:U5U1007 2.8 88.7 1.0 C15 I:U5U1007 2.8 80.1 1.0 CD2 I:LEU238 3.3 42.2 1.0 CD2 I:HIS242 3.4 58.0 1.0 CE1 I:HIS242 3.7 59.8 1.0 C2 I:U5U1007 3.9 89.7 1.0 C1 I:U5U1007 4.0 76.3 1.0 C7 I:U5U1007 4.0 91.9 1.0 N16 I:U5U1007 4.1 74.5 1.0 CG I:LEU238 4.3 40.1 1.0 CD1 I:LEU238 4.4 39.5 1.0 C3 I:U5U1007 4.4 94.4 1.0 C4 I:U5U1007 4.5 74.2 1.0 CG I:HIS242 4.6 52.7 1.0 ND1 I:HIS242 4.7 55.7 1.0 C12 I:U5U1007 4.8 72.5 1.0 CB I:LEU238 4.8 39.9 1.0 CG1 I:VAL241 4.9 36.3 1.0

Z.L.Zhang, J.Z.Zhang. Structure of Human Serum Albumin Palladium(II) Agent Complex To Be Published.